Connection check
verified live · 27h ago
biocosm
Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
Tools
13
GitHub stars
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Installs / wk
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Licence
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Transport
streamable-http
Last checked
27h ago
Tools & capabilities
13 toolsRead from the running server on 27h ago.
find_by_phase
limitphase*node_type
List drugs/diagnostics at a specific clinical phase. List drugs/diagnostics at a specific clinical phase.
find_by_target
limittarget_gene*
Find all drugs that target a specific gene/protein. Find all drugs that target a specific gene/protein.
find_related
limitnode_id*link_type
Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a t… Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a target node, the drugs that hit it) - "same_company": drugs sharing a company with this node - "same_target_class": drugs with the same mechanism_class
get_company_portfolio
company_name*
Get a company's full drug/diagnostic portfolio from BioCosm. Get a company's full drug/diagnostic portfolio from BioCosm.
get_coverage
Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data," never a true zero.… Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data," never a true zero. BioCosm is AI-generated and may contain errors.
get_node
node_id*
Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available… Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs, mostly blockbusters, as annualized quarterly estimates; source links when present), probability-of- success predictions for pipeline drugs (with confidence intervals and contributing factors), structured clinical trial outcomes, external cross-references, and writeup availability. Empty fields mean "not in BioCosm's coverage," NOT zero or absent in reality.
get_node_freshness
node_id*
Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score. Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.
get_pos_score
node_id*
Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns None for nodes with… Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns None for nodes without a PoS score (typically only late-stage pipeline drugs are scored).
get_staleness_report
limit
Get writeup staleness report: overall stats, top stale nodes, data source freshness. Get writeup staleness report: overall stats, top stale nodes, data source freshness.
get_stats
Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs. Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.
get_writeup
node_id*
Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score. Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.
list_by_therapeutic_area
area*limit
List all nodes in a given therapeutic area. List all nodes in a given therapeutic area.
search_nodes
limitquery*